ETE Toolkit
3.0
Changelog history
The ETE tutorial
ETE’s Reference Guide
ETE Toolkit
Docs
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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U
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W
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X
A
add_child() (TreeNode method)
add_face() (FaceContainer method)
(TreeNode method)
add_face_to_node() (in module ete3)
add_feature() (TreeNode method)
add_features() (TreeNode method)
add_sister() (TreeNode method)
annotate_ncbi_taxa() (PhyloNode method)
AttrFace (class in ete3)
B
BarChartFace (class in ete3)
build_from_file() (Nexml method)
C
change_dist_to_evol() (EvolNode method)
check_monophyly() (TreeNode method)
children (TreeNode attribute)
CircleFace (class in ete3)
ClusterNode (class in ete3)
ClusterTree (in module ete3)
collapse_lineage_specific_expansions() (PhyloNode method)
COLOR_SCHEMES (in module ete3)
compare() (TreeNode method)
convert_to_ultrametric() (TreeNode method)
copy() (TreeNode method)
D
del_feature() (TreeNode method)
delete() (TreeNode method)
describe() (TreeNode method)
detach() (TreeNode method)
dist (TreeNode attribute)
DynamicItemFace (class in ete3)
E
ete2.ncbi_taxonomy (module)
ete3 (module)
,
[1]
ete3.clustering (module)
,
[1]
ete3.evol (module)
ete3.nexml (module)
ete3.parser.seqgroup (module)
ete3.phylo (module)
ete3.phyloxml (module)
ete3.treeview (module)
ete3.webplugin (module)
,
[1]
EvolEvent (class in ete3.phylo)
EvolNode (class in ete3)
EvolTree (in module ete3)
expand_polytomies() (TreeNode method)
F
Face (class in ete3)
FaceContainer (class in ete3)
from_parent_child_table() (TreeNode static method)
from_skbio() (TreeNode static method)
G
get_age() (PhyloNode method)
get_age_balanced_outgroup() (PhyloNode method)
get_ancestors() (TreeNode method)
get_ascii() (TreeNode method)
get_cached_content() (TreeNode method)
get_children() (TreeNode method)
get_closest_leaf() (TreeNode method)
get_common_ancestor() (TreeNode method)
get_descendant_by_node_id() (EvolNode method)
get_descendant_evol_events() (PhyloNode method)
get_descendants() (TreeNode method)
get_distance() (TreeNode method)
get_dunn() (ClusterNode method)
get_edges() (TreeNode method)
get_entries() (SeqGroup method)
get_evol_model() (EvolNode method)
get_farthest_leaf() (TreeNode method)
get_farthest_node() (TreeNode method)
get_farthest_oldest_leaf() (PhyloNode method)
get_farthest_oldest_node() (PhyloNode method)
get_leaf_names() (TreeNode method)
get_leaf_profiles() (ClusterNode method)
get_leaves() (TreeNode method)
get_leaves_by_name() (TreeNode method)
get_midpoint_outgroup() (TreeNode method)
get_monophyletic() (TreeNode method)
get_most_likely() (EvolNode method)
get_my_evol_events() (PhyloNode method)
get_seq() (SeqGroup method)
get_silhouette() (ClusterNode method)
get_sisters() (TreeNode method)
get_speciation_trees() (PhyloNode method)
get_species() (PhyloNode method)
get_topology_id() (TreeNode method)
get_tree_root() (TreeNode method)
H
hoverEnterEvent() (SequenceFace.InteractiveLetterItem method)
hoverLeaveEvent() (SequenceFace.InteractiveLetterItem method)
I
img_style (TreeNode attribute)
ImgFace (class in ete3)
is_leaf() (TreeNode method)
is_root() (TreeNode method)
iter_ancestors() (TreeNode method)
iter_descendants() (TreeNode method)
iter_edges() (TreeNode method)
iter_entries() (SeqGroup method)
iter_leaf_names() (TreeNode method)
iter_leaf_profiles() (ClusterNode method)
iter_leaves() (TreeNode method)
iter_prepostorder() (TreeNode method)
iter_search_nodes() (TreeNode method)
iter_species() (PhyloNode method)
L
ladderize() (TreeNode method)
link_to_alignment() (EvolNode method)
(PhyloNode method)
link_to_arraytable() (ClusterNode method)
link_to_evol_model() (EvolNode method)
M
mark_tree() (EvolNode method)
N
ncbi_compare() (PhyloNode method)
Nexml (class in ete3)
NexmlTree (class in ete3)
NodeStyle (class in ete3)
P
PhyloNode (class in ete3)
PhyloTree (in module ete3)
Phyloxml (class in ete3)
PhyloxmlTree (class in ete3)
PieChartFace (class in ete3)
populate() (TreeNode method)
ProfileFace (class in ete3)
prune() (TreeNode method)
R
random_color() (in module ete3)
reconcile() (PhyloNode method)
RectFace (class in ete3)
register_action() (WebTreeApplication method)
remove_child() (TreeNode method)
remove_sister() (TreeNode method)
render() (EvolNode method)
(TreeNode method)
resolve_polytomy() (TreeNode method)
robinson_foulds() (TreeNode method)
run_model() (EvolNode method)
S
search_nodes() (TreeNode method)
sep (EvolNode attribute)
SeqGroup (class in ete3)
SeqMotifFace (class in ete3)
SequenceFace (class in ete3)
SequenceFace.InteractiveLetterItem (class in ete3)
set_default_layout_fn() (WebTreeApplication method)
set_distance_function() (ClusterNode method)
set_external_app_handler() (WebTreeApplication method)
set_external_tree_renderer() (WebTreeApplication method)
set_outgroup() (TreeNode method)
set_seq() (SeqGroup method)
set_species_naming_function() (PhyloNode method)
set_style() (TreeNode method)
set_tree_loader() (WebTreeApplication method)
set_tree_size() (WebTreeApplication method)
set_tree_style() (WebTreeApplication method)
show() (EvolNode method)
(TreeNode method)
sort_descendants() (TreeNode method)
species (PhyloNode attribute)
split_by_dups() (PhyloNode method)
StackedBarFace (class in ete3)
standardize() (TreeNode method)
StaticItemFace (class in ete3)
support (TreeNode attribute)
SVG_COLORS (in module ete3)
swap_children() (TreeNode method)
T
TextFace (class in ete3)
traverse() (TreeNode method)
Tree (in module ete3)
TreeFace (class in ete3)
TreeNode (class in ete3)
TreeStyle (class in ete3)
U
unroot() (TreeNode method)
up (TreeNode attribute)
W
WebTreeApplication (class in ete3)
write() (EvolNode method)
(SeqGroup method)
(TreeNode method)
X
x (EvolNode attribute)