README.rst
setup.py
src/biotite/__init__.py
src/biotite/copyable.py
src/biotite/file.py
src/biotite/temp.py
src/biotite/visualize.py
src/biotite.egg-info/PKG-INFO
src/biotite.egg-info/SOURCES.txt
src/biotite.egg-info/dependency_links.txt
src/biotite.egg-info/not-zip-safe
src/biotite.egg-info/requires.txt
src/biotite.egg-info/top_level.txt
src/biotite/application/__init__.py
src/biotite/application/application.py
src/biotite/application/localapp.py
src/biotite/application/msaapp.py
src/biotite/application/webapp.py
src/biotite/application/blast/__init__.py
src/biotite/application/blast/alignment.py
src/biotite/application/blast/webapp.py
src/biotite/application/clustalo/__init__.py
src/biotite/application/clustalo/app.py
src/biotite/application/dssp/__init__.py
src/biotite/application/dssp/app.py
src/biotite/application/mafft/__init__.py
src/biotite/application/mafft/app.py
src/biotite/application/muscle/__init__.py
src/biotite/application/muscle/app.py
src/biotite/database/__init__.py
src/biotite/database/entrez/__init__.py
src/biotite/database/entrez/fetch.py
src/biotite/database/entrez/search.py
src/biotite/database/rcsb/__init__.py
src/biotite/database/rcsb/fetch.py
src/biotite/database/rcsb/search.py
src/biotite/sequence/__init__.py
src/biotite/sequence/alphabet.py
src/biotite/sequence/annotation.py
src/biotite/sequence/codec.c
src/biotite/sequence/codon.py
src/biotite/sequence/codon_tables.txt
src/biotite/sequence/search.py
src/biotite/sequence/seqtypes.py
src/biotite/sequence/sequence.py
src/biotite/sequence/align/__init__.py
src/biotite/sequence/align/alignment.py
src/biotite/sequence/align/matrix.py
src/biotite/sequence/align/multiple.c
src/biotite/sequence/align/pairwise.c
src/biotite/sequence/align/matrix_data/BLOSUM100.mat
src/biotite/sequence/align/matrix_data/BLOSUM30.mat
src/biotite/sequence/align/matrix_data/BLOSUM35.mat
src/biotite/sequence/align/matrix_data/BLOSUM40.mat
src/biotite/sequence/align/matrix_data/BLOSUM45.mat
src/biotite/sequence/align/matrix_data/BLOSUM50.mat
src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat
src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat
src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat
src/biotite/sequence/align/matrix_data/BLOSUM55.mat
src/biotite/sequence/align/matrix_data/BLOSUM60.mat
src/biotite/sequence/align/matrix_data/BLOSUM62.mat
src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat
src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat
src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat
src/biotite/sequence/align/matrix_data/BLOSUM65.mat
src/biotite/sequence/align/matrix_data/BLOSUM70.mat
src/biotite/sequence/align/matrix_data/BLOSUM75.mat
src/biotite/sequence/align/matrix_data/BLOSUM80.mat
src/biotite/sequence/align/matrix_data/BLOSUM85.mat
src/biotite/sequence/align/matrix_data/BLOSUM90.mat
src/biotite/sequence/align/matrix_data/BLOSUMN.mat
src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat
src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat
src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat
src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat
src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat
src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat
src/biotite/sequence/align/matrix_data/DAYHOFF.mat
src/biotite/sequence/align/matrix_data/GONNET.mat
src/biotite/sequence/align/matrix_data/IDENTITY.mat
src/biotite/sequence/align/matrix_data/MATCH.mat
src/biotite/sequence/align/matrix_data/NUC.mat
src/biotite/sequence/align/matrix_data/PAM10.mat
src/biotite/sequence/align/matrix_data/PAM100.mat
src/biotite/sequence/align/matrix_data/PAM110.mat
src/biotite/sequence/align/matrix_data/PAM120.mat
src/biotite/sequence/align/matrix_data/PAM130.mat
src/biotite/sequence/align/matrix_data/PAM140.mat
src/biotite/sequence/align/matrix_data/PAM150.mat
src/biotite/sequence/align/matrix_data/PAM160.mat
src/biotite/sequence/align/matrix_data/PAM170.mat
src/biotite/sequence/align/matrix_data/PAM180.mat
src/biotite/sequence/align/matrix_data/PAM190.mat
src/biotite/sequence/align/matrix_data/PAM20.mat
src/biotite/sequence/align/matrix_data/PAM200.mat
src/biotite/sequence/align/matrix_data/PAM210.mat
src/biotite/sequence/align/matrix_data/PAM220.mat
src/biotite/sequence/align/matrix_data/PAM230.mat
src/biotite/sequence/align/matrix_data/PAM240.mat
src/biotite/sequence/align/matrix_data/PAM250.mat
src/biotite/sequence/align/matrix_data/PAM260.mat
src/biotite/sequence/align/matrix_data/PAM270.mat
src/biotite/sequence/align/matrix_data/PAM280.mat
src/biotite/sequence/align/matrix_data/PAM290.mat
src/biotite/sequence/align/matrix_data/PAM30.mat
src/biotite/sequence/align/matrix_data/PAM300.mat
src/biotite/sequence/align/matrix_data/PAM310.mat
src/biotite/sequence/align/matrix_data/PAM320.mat
src/biotite/sequence/align/matrix_data/PAM330.mat
src/biotite/sequence/align/matrix_data/PAM340.mat
src/biotite/sequence/align/matrix_data/PAM350.mat
src/biotite/sequence/align/matrix_data/PAM360.mat
src/biotite/sequence/align/matrix_data/PAM370.mat
src/biotite/sequence/align/matrix_data/PAM380.mat
src/biotite/sequence/align/matrix_data/PAM390.mat
src/biotite/sequence/align/matrix_data/PAM40.mat
src/biotite/sequence/align/matrix_data/PAM400.mat
src/biotite/sequence/align/matrix_data/PAM410.mat
src/biotite/sequence/align/matrix_data/PAM420.mat
src/biotite/sequence/align/matrix_data/PAM430.mat
src/biotite/sequence/align/matrix_data/PAM440.mat
src/biotite/sequence/align/matrix_data/PAM450.mat
src/biotite/sequence/align/matrix_data/PAM460.mat
src/biotite/sequence/align/matrix_data/PAM470.mat
src/biotite/sequence/align/matrix_data/PAM480.mat
src/biotite/sequence/align/matrix_data/PAM490.mat
src/biotite/sequence/align/matrix_data/PAM50.mat
src/biotite/sequence/align/matrix_data/PAM500.mat
src/biotite/sequence/align/matrix_data/PAM60.mat
src/biotite/sequence/align/matrix_data/PAM70.mat
src/biotite/sequence/align/matrix_data/PAM80.mat
src/biotite/sequence/align/matrix_data/PAM90.mat
src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat
src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat
src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat
src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat
src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat
src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat
src/biotite/sequence/graphics/__init__.py
src/biotite/sequence/graphics/alignment.py
src/biotite/sequence/graphics/colorschemes.py
src/biotite/sequence/graphics/dendrogram.py
src/biotite/sequence/graphics/features.py
src/biotite/sequence/graphics/logo.py
src/biotite/sequence/graphics/color_schemes/autumn.json
src/biotite/sequence/graphics/color_schemes/blossom.json
src/biotite/sequence/graphics/color_schemes/clustalx_dna.json
src/biotite/sequence/graphics/color_schemes/clustalx_protein.json
src/biotite/sequence/graphics/color_schemes/flower.json
src/biotite/sequence/graphics/color_schemes/jalview_buried.json
src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json
src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json
src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json
src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json
src/biotite/sequence/graphics/color_schemes/jalview_taylor.json
src/biotite/sequence/graphics/color_schemes/jalview_zappo.json
src/biotite/sequence/graphics/color_schemes/ocean.json
src/biotite/sequence/graphics/color_schemes/pb_flower.json
src/biotite/sequence/graphics/color_schemes/rainbow_dna.json
src/biotite/sequence/graphics/color_schemes/rainbow_protein.json
src/biotite/sequence/graphics/color_schemes/spring.json
src/biotite/sequence/graphics/color_schemes/sunset.json
src/biotite/sequence/graphics/color_schemes/wither.json
src/biotite/sequence/io/__init__.py
src/biotite/sequence/io/fasta/__init__.py
src/biotite/sequence/io/fasta/convert.py
src/biotite/sequence/io/fasta/file.py
src/biotite/sequence/io/fastq/__init__.py
src/biotite/sequence/io/fastq/file.py
src/biotite/sequence/io/genbank/__init__.py
src/biotite/sequence/io/genbank/annotation.py
src/biotite/sequence/io/genbank/file.py
src/biotite/sequence/io/genbank/metadata.py
src/biotite/sequence/io/genbank/sequence.py
src/biotite/sequence/io/gff/__init__.py
src/biotite/sequence/io/gff/convert.py
src/biotite/sequence/io/gff/file.py
src/biotite/sequence/phylo/__init__.py
src/biotite/sequence/phylo/nj.c
src/biotite/sequence/phylo/tree.c
src/biotite/sequence/phylo/upgma.c
src/biotite/structure/__init__.py
src/biotite/structure/atoms.py
src/biotite/structure/bonds.c
src/biotite/structure/box.py
src/biotite/structure/celllist.c
src/biotite/structure/chains.py
src/biotite/structure/compare.py
src/biotite/structure/error.py
src/biotite/structure/filter.py
src/biotite/structure/geometry.py
src/biotite/structure/hbond.py
src/biotite/structure/integrity.py
src/biotite/structure/mechanics.py
src/biotite/structure/rdf.py
src/biotite/structure/residues.py
src/biotite/structure/sasa.c
src/biotite/structure/sse.py
src/biotite/structure/superimpose.py
src/biotite/structure/transform.py
src/biotite/structure/util.py
src/biotite/structure/info/__init__.py
src/biotite/structure/info/atom_masses.json
src/biotite/structure/info/bonds.py
src/biotite/structure/info/intra_bonds.msgpack
src/biotite/structure/info/link_types.msgpack
src/biotite/structure/info/masses.py
src/biotite/structure/info/misc.py
src/biotite/structure/info/radii.py
src/biotite/structure/info/residue_masses.msgpack
src/biotite/structure/info/residue_names.msgpack
src/biotite/structure/io/__init__.py
src/biotite/structure/io/general.py
src/biotite/structure/io/trajfile.py
src/biotite/structure/io/dcd/__init__.py
src/biotite/structure/io/dcd/file.py
src/biotite/structure/io/gro/__init__.py
src/biotite/structure/io/gro/file.py
src/biotite/structure/io/mmtf/__init__.py
src/biotite/structure/io/mmtf/convertarray.c
src/biotite/structure/io/mmtf/convertfile.c
src/biotite/structure/io/mmtf/decode.c
src/biotite/structure/io/mmtf/encode.c
src/biotite/structure/io/mmtf/file.py
src/biotite/structure/io/netcdf/__init__.py
src/biotite/structure/io/netcdf/file.py
src/biotite/structure/io/npz/__init__.py
src/biotite/structure/io/npz/file.py
src/biotite/structure/io/pdb/__init__.py
src/biotite/structure/io/pdb/convert.py
src/biotite/structure/io/pdb/file.py
src/biotite/structure/io/pdbx/__init__.py
src/biotite/structure/io/pdbx/convert.py
src/biotite/structure/io/pdbx/file.py
src/biotite/structure/io/tng/__init__.py
src/biotite/structure/io/tng/file.py
src/biotite/structure/io/trr/__init__.py
src/biotite/structure/io/trr/file.py
src/biotite/structure/io/xtc/__init__.py
src/biotite/structure/io/xtc/file.py