oligoClasses

Classes for high-throughput arrays supported by oligo

Bioconductor version: 2.5

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo package.

Author: Benilton Carvalho <bcarvalh at jhsph.edu> and Robert Scharpf <rscharpf at jhsph.edu>

Maintainer: Benilton Carvalho <bcarvalh at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("oligoClasses")

To cite this package in a publication, start R and enter:

    citation("oligoClasses")

Documentation

PDF R Script SnpLevelClasses Vignette
PDF   Reference Manual

Details

biocViews Infrastructure
Depends Biobase
Imports graphics, methods, IRanges(>= 1.3.16), Biostrings(>= 2.13.9), Biobase(>= 2.5.5)
Suggests RSQLite, oligo
System Requirements
License GPL (>= 2)
URL
Depends On Me mBPCR, oligo, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.hg18.60mer.expr, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, SNPchip
Imports Me crlmm, SNPchip
Suggests Me VanillaICE
Version 1.8.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source oligoClasses_1.8.0.tar.gz
Windows Binary oligoClasses_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary oligoClasses_1.8.0.tgz
Package Downloads Report Download Stats

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