Bioconductor version: 2.5
Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, and WIG built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.
Author: Michael Lawrence, Vince Carey, Robert Gentleman
Maintainer: Michael Lawrence <mflawren at fhcrc.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("rtracklayer")
To cite this package in a publication, start R and enter:
citation("rtracklayer")
R Script | rtracklayer | |
Reference Manual |
biocViews | Annotation, Visualization, DataImport |
Depends | R (>= 2.7.0), methods, RCurl |
Imports | XML (>= 1.98-0), IRanges(>= 1.3.50), Biostrings(>= 2.11.14), BSgenome(>= 1.13.10) |
Suggests | humanStemCell, microRNA(>= 1.1.1), genefilter, limma, org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg18 |
System Requirements | |
License | Artistic-2.0 |
URL | |
Depends On Me | GenomicFeatures |
Imports Me | ChromHeatMap |
Suggests Me | ind1KG, oneChannelGUI, Ringo, rMAT |
Version | 1.6.0 |
Since | Bioconductor 2.2 (R-2.7) |
Package Source | rtracklayer_1.6.0.tar.gz |
Windows Binary | rtracklayer_1.6.0.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | rtracklayer_1.6.0.tgz |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
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