Reads models in the Systems Biology Markup Language ('SBML') (Hucka et al. (2003) <doi:10.1093/bioinformatics/btg015>) through the bundled 'libSBML' library (Bornstein et al. (2008) <doi:10.1093/bioinformatics/btn051>). Lists a model's species, parameters, compartments, reactions, rules, events and function definitions, and converts the model into ready-to-run simulation code for 'deSolve', 'mrgsolve', 'rxode2', 'MATLAB', 'Julia' or 'ubiquity'. Models are read, not modified.
| Version: | 0.1.0 |
| Imports: | Rcpp (≥ 0.12.6) |
| LinkingTo: | Rcpp |
| Suggests: | deSolve, knitr, mrgsolve, rmarkdown, rxode2, testthat (≥ 3.0.0), ubiquity |
| Published: | 2026-11-03 |
| DOI: | 10.32614/CRAN.package.r2sbml (may not be active yet) |
| Author: | Satyaprakash Nayak [aut, cre, cph], Sarah M. Keating [ctb] (Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp), Frank T. Bergmann [ctb] (Author of 'libSBML' and of the example code adapted in src/convertReactions.cpp and src/getMath.cpp), Lucian P. Smith [ctb] (Author of 'libSBML'), Brett G. Olivier [ctb] (Author of 'libSBML'), Akiya Jouraku [ctb] (Author of 'libSBML'), Michael Hucka [ctb] (Author of 'libSBML'), Ben Bornstein [ctb] (Author of 'libSBML'), Jeroen Ooms [ctb] (Windows build support), California Institute of Technology [cph] (Copyright holder of 'libSBML', 2002-2020), EMBL European Bioinformatics Institute [cph] (Copyright holder of 'libSBML', 2009-2018), University of Heidelberg [cph] (Copyright holder of 'libSBML', 2013-2020), University College London [cph] (Copyright holder of 'libSBML', 2020), Japan Science and Technology Agency [cph] (Copyright holder of 'libSBML', 2002-2005), Gilles Vollant [cph] (Author of MiniZip, bundled with 'libSBML'), Mathias Svensson [cph] (Contributor to MiniZip, bundled with 'libSBML'), Even Rouault [cph] (Contributor to MiniZip, bundled with 'libSBML'), Nathan Moinvaziri [cph] (Contributor to MiniZip, bundled with 'libSBML'), Terry Thorsen [cph] (Contributor to MiniZip, bundled with 'libSBML'), Info-ZIP [cph] (Copyright holder of encryption code in MiniZip, bundled with 'libSBML'), Ludwig Schwardt [cph] (Author of the zlib iostream wrappers bundled with 'libSBML'), Kevin Ruland [cph] (Author of the zlib iostream wrappers bundled with 'libSBML'), M. Petra Baranski [cph] (Author of 'maddy', bundled with 'libSBML'), Tim Gromeyer [cph] (Author of 'html2md', bundled with 'libSBML') |
| Maintainer: | Satyaprakash Nayak <satyaprakash.nayak at gmail.com> |
| BugReports: | https://github.com/sn248/r2sbml/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | See file inst/COPYRIGHTS r2sbml copyright details |
| URL: | https://sn248.github.io/r2sbml/, https://github.com/sn248/r2sbml |
| NeedsCompilation: | yes |
| SystemRequirements: | cmake, libxml2, libbz2 |
| Language: | en-GB |
| Materials: | README, NEWS |
| CRAN checks: | r2sbml results [issues need fixing before 2026-11-24] |
| Reference manual: | r2sbml.html , r2sbml.pdf |
| Vignettes: |
Limitations and unimplemented behaviour (source, R code) Getting started with r2sbml (source, R code) |
| Package source: | r2sbml_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: r2sbml_0.1.0.zip, r-oldrel: r2sbml_0.1.0.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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